It seems that the Lineage OS folks are faced with the similar issue:
https://gitlab.com/LineageOS/issues/android/issues/1446
It seems that some Qualcomm AGPS related binary paths needs to be updated:
https://gitlab.com/HardStyl3r/android_device_lge_g3-common/-/commit/208f79c790e97def2e57dfc6385b2823bf2b4aa0
And it seems that on my JP1 the xtra2 is used in the /etc/gps.conf
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